
FOLLOWUS
1. Department of Computer Science
2. Institute of Basic Medical Science
3. CAMS & PUMC
4. ,China
5. BMERC Bioengineering College
6. Boston University MA,02215
纸质出版日期:1997
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[1]祝庆麟,Sandor Vajda,Temple F.Smith.β-TURN NEW CLASSIFICATION AND ITS SOME FEATURES IN PROTEINS[J].Chinese Medical Sciences Journal,1997(02):84-91.
β-TURN NEW CLASSIFICATION AND ITS SOME FEATURES IN PROTEINS[J]. Chinese medical sciences journal, 1997, (2): 84-91.
<正> An inspection of the φ-ψ angle distribution strongly suggests that protein folding is highly constrained. A number of researchers have even suggested that a relatively small set of discrete φ-ψ regions might be sufficient to describe most protein conformation. The total of 541 tight turns from 101 non-identical proteins were extracted form Brookhaven DataBank. The dihedral values of tight turns were scattered into the seven regions on the Ramachandran plot. These seven regions were called A1
A2
B1
B2
B22
T1 and T2. A1 and A2 are the traditional a-helix regions
B1
B2 and B22 the β-strand regions
Tl and T2 the β-turn regions. The A2 and T2 regions were not defined as "discrete" or single points but rather as one dimensional extended states. Based on the geometry of the two central residues of the tight turns
the new classification of β-turn was defined. This classification of the majority of β-turns fell into only six of the possible forty nine region combinations and were identifiable wi
An inspection of the φ-ψ angle distribution strongly suggests that protein folding is highly constrained. A number of researchers have even suggested that a relatively small set of discrete φ-ψ regions might be sufficient to describe most protein conformation. The total of 541 tight turns from 101 non-identical proteins were extracted form Brookhaven DataBank. The dihedral values of tight turns were scattered into the seven regions on the Ramachandran plot. These seven regions were called A1
A2
B1
B2
B22
T1 and T2. A1 and A2 are the traditional a-helix regions
B1
B2 and B22 the β-strand regions
Tl and T2 the β-turn regions. The A2 and T2 regions were not defined as "discrete" or single points but rather as one dimensional extended states. Based on the geometry of the two central residues of the tight turns
the new classification of β-turn was defined. This classification of the majority of β-turns fell into only six of the possible forty nine region combinations and were identifiable with the traditional nomenclature of Venkat-achalam(1)
but much simpler.The function of β-turn in the conformation of proteins was studied. The hydrophobicity for different type turns was discussed. It shows that β-turns have very strong hydrophilic property
so they are usually situated at the folding protein surface. The features of β-turn and its amino acid distribution in this 541 β-turn group and different type β-turn were given.
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